PmiREN: Plant microRNA Encyclopedia

Aly-MIR168b

Basic info.

miRNA locus ID
Aly-MIR168b

miRNA locus accession
PmiREN000449

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_8 2067209 2067339 +

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AG     GG   T   G      C          T     ----  T        --      T  AC
     TTACC  CGG CTC GATTCG TTGGTGCAGG CGGGA    AC GATTAGCT  GACAAT AC  
     |||||  ||| ||| |||||| |||||||||| |||||    || ||||||||  |||||| ||   
     AGTGG  GCC GAG CTAAGT AACTATGTTC GCCCT    TG TTGGTTGG  CTGTTG TG  
AAAAA     -A   T   G      C          T     AGAG  T        TA      -  TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-166	Aly-MIR168a	Aly-scaffold_7: 10245612-10245757 -	Arabidopsis lyrata	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +
SY-179	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Arabidopsis thaliana	Ath-MIR168a	Ath-Chr4: 10578632-10578777 +
SY-180	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Arabidopsis thaliana	Ath-MIR168b	Ath-Chr5: 18358783-18358913 -
SY-181	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Brassica oleracea	Bol-MIR168a	Bol-C07: 24398324-24398464 +
SY-182	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Brassica oleracea	Bol-MIR168c	Bol-C09: 7067563-7067703 -
SY-183	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Brassica rapa	Bra-MIR168f	Bra-A09: 13356294-13356434 -
SY-184	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Capsella rubella	Cru-MIR168a	Cru-scaffold_7: 8258806-8258945 -
SY-185	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Capsella rubella	Cru-MIR168b	Cru-scaffold_8: 1121379-1121509 +
SY-186	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Eutrema salsugineum	Esa-MIR168b	Esa-scaffold_1: 8872731-8872872 -
SY-187	Aly-MIR168b	Aly-scaffold_8: 2067209-2067339 +	Eutrema salsugineum	Esa-MIR168c	Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR168b

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