Aly-MIR169a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TAT      -           C                      TAA     -------C       ATAC  - ATTAAGACATTTTAAGTTTCAAATTTCTTTGGTTCTTCAAGGATTAAGGAAGAAAG
   GTGACG AAAGTAGTGTG AGCCAAGGATGACTTGCCGATT   ATGAT        TTTCTTT    TC T                                                        
   |||||| ||||||||||| ||||||||||||||||||||||   |||||        |||||||    || |                                                         
   CGCTGT TTTCATTGCAC TCGGTTCCTGTTGAACGGCTAG   TACTA        AAAGAAA    CC G                                                        
 CG      G           A                      ---     ACAATGAA       -AAA  A AATAGAACATGTATATAAATTATGTCGTATTATATATATAGATGTATATATCGGAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-188 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Arabidopsis thaliana Ath-MIR169a Ath-Chr3: 4358990-4359222 -
SY-189 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Brassica rapa Bra-MIR169h Bra-A01: 27239224-27239432 +
SY-190 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Brassica rapa Bra-MIR169j Bra-A03: 17544406-17544602 -
SY-191 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Brassica rapa Bra-MIR169l Bra-A05: 24007347-24007484 +
SY-192 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Capsella rubella Cru-MIR169d Cru-scaffold_3: 4431202-4431418 -
SY-193 Aly-MIR169a Aly-scaffold_3: 5439439-5439688 - Eutrema salsugineum Esa-MIR169a Esa-scaffold_13: 5033375-5033601 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL1G29910.t1 1.0 1 NA
AL1G62880.t1 2.0 2 NA
AL286U10010.t1 2.0 1 NA
AL2G32520.t1 2.0 2 NA
AL3G25260.t1 2.0 1 NA
AL3G26230.t1 2.0 1 NA
AL8G19750.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference