Aly-MIR169h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 --          C    G   -          T    T     -  TT     AATA    A  A       C    TC
A  AGAATGAGAA TTGT TGG TAGCCAAGGA GACT GCCTG CG  TTAAC    CAAT TC AAGACTA TCGA  
|  |||||||||| |||| ||| |||||||||| |||| ||||| ||  |||||    |||| || ||||||| ||||   
T  TCTTGTTCTT AACA ACT ATCGGTTCCT CTGA CGGAC GC  GATTG    GTTG AG TTCTGAT AGCT  
 CC          -    A   T          -    -     T  -T     ----    -  A       -    AG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-210 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Arabidopsis thaliana Ath-MIR169h Ath-Chr1: 6695442-6695584 -
SY-211 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Brassica rapa Bra-MIR169n Bra-A06: 7754638-7754773 -
SY-212 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Brassica rapa Bra-MIR169o Bra-A09: 40392906-40393053 +
SY-213 Aly-MIR169h Aly-scaffold_1: 8198500-8198645 - Brassica rapa Bra-MIR169x Bra-A08: 20152692-20152834 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL1G62880.t1 1.0 2 NA
AL286U10010.t1 1.0 1 NA
AL2G32520.t1 1.0 1 NA
AL3G25260.t1 1.0 1 NA
AL3G26230.t1 1.0 1 NA
AL1G29910.t1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference