Aly-MIR169d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        AAT      T     T         AT         ATTTT     ACA    TTA
   GAAAA   AGAGAA GAGAT GAGCCAAGG  GACTTGCCG     TATCA   AATC   
   |||||   |||||| ||||| |||||||||  |||||||||     |||||   ||||    
   CTTTT   TCTCTT CTTTG CTCGGTTCC  TTGAACGGC     GTGGT   TTAG   
TAG     -CT      C     T         AG         ---CC     --A    TCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-195 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Arabidopsis thaliana Ath-MIR169d Ath-Chr1: 20039479-20039596 -
SY-196 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Brassica oleracea Bol-MIR169b Bol-C03: 56791745-56791864 +
SY-197 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Brassica oleracea Bol-MIR169e Bol-C06: 21156226-21156337 -
SY-198 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Brassica rapa Bra-MIR169q Bra-A06: 679097-679215 -
SY-199 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Brassica rapa Bra-MIR169u Bra-A08: 1019521-1019639 -
SY-200 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Capsella rubella Cru-MIR169a Cru-scaffold_1: 18887754-18887872 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL3G16380.t1 1.5 2 NA
AL6G16590.t1 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference