Aly-MIR169f

Basic info.

• miRNA locus ID
• Aly-MIR169f

• miRNA locus accession
• PmiREN000455

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_3  6024155  6024301  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

   A       A        ATT         AT          TTTAAACA    C     ------AT     TTG
  G AGGAATA AGAATGGA   GAGCCAAGG  GACTTGCCGG        CAAC GGATT        GACCA   
  | ||||||| ||||||||   |||||||||  ||||||||||        |||| |||||        |||||    
  C TTCTTAT TCTTGCTT   CTCGGTTCC  TTGAACGGTC        GTTG TCTAA        CTGGT   
TA C       C        CGT         AG          TGTGCTTA    -     CACTTACT     TTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference