Aly-MIR169g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  G      T      T    TT         AT           TTTTT     AT     TTA
   GAAGAG AGAGAA GAGG  GAGCCAAGG  GACTTGCCGGG     TACCA  GAATC   
   |||||| |||||| ||||  |||||||||  |||||||||||     |||||  |||||    
   CTTTTC TCTCTT CTTT  CTCGGTTCC  TTGAACGGCCT     GTGGT  TTTAG   
TAG      T      C    GT         AG           -----     --     TCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-204 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Arabidopsis thaliana Ath-MIR169g Ath-Chr4: 11483010-11483134 -
SY-205 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Brassica oleracea Bol-MIR169a Bol-C03: 50192527-50192643 +
SY-206 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Brassica rapa Bra-MIR169d Bra-A01: 6326029-6326149 -
SY-207 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Brassica rapa Bra-MIR169s Bra-A08: 12392918-12393036 +
SY-208 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Capsella rubella Cru-MIR169c Cru-scaffold_7: 7418995-7419123 +
SY-209 Aly-MIR169g Aly-scaffold_7: 9193033-9193153 + Eutrema salsugineum Esa-MIR169c Esa-scaffold_1: 7989367-7989491 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL3G16380.t1 1.5 2 NA
AL6G16590.t1 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference