PmiREN: Plant microRNA Encyclopedia

Aly-MIR170

Basic info.

miRNA locus ID
Aly-MIR170

miRNA locus accession
PmiREN000463

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_8 22899757 22899857 +

Comments
A member of family MIR170

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    -C        TCC  CT         C       C      TCTCCTA
  GT  CGAGAGAG   CT  GATATTGGC TGGTTCA TCAGAT       
  ||  ||||||||   ||  ||||||||| ||||||| ||||||       A
  CG  GCTCTCTC   GA  CTATAACTG GCCGAGT AGTCTA       
TT  CT        -CT  CT         T       T      CTCAATC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-222	Aly-MIR170	Aly-scaffold_8: 22899757-22899857 +	Arabidopsis thaliana	Ath-MIR170	Ath-Chr5: 26411574-26411675 -
SY-223	Aly-MIR170	Aly-scaffold_8: 22899757-22899857 +	Eutrema salsugineum	Esa-MIR171a	Esa-scaffold_6: 36758-36858 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL4G44270.t1	1.0	NA	NA
AL5G42940.t1	1.0	NA	NA
AL6G53350.t1	1.0	0	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR170

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