Aly-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     C          CC  TT         C       C      CT  -------CCT   CACACTCAC
    G ACGAGAGAGT  CT  GATATTGGC TGGTTCA TCAGAT  TC          GAC         
    | ||||||||||  ||  ||||||||| ||||||| ||||||  ||          |||         G
    C TGCTCTCTCA  GA  CTATAACCG GCCGAGT AGTCTA  AG          CGT         
ATCT -          -T  CT         C       T      TT  ATCTCTCTTA   ATACATGCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-224 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Arabidopsis thaliana Ath-MIR171a Ath-Chr3: 19073432-19073561 +
SY-225 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Brassica rapa Bra-MIR170 Bra-A09: 32760603-32760723 +
SY-226 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Brassica rapa Bra-MIR171e Bra-A03: 22995436-22995560 +
SY-227 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Brassica rapa Bra-MIR171f Bra-A01: 12690698-12690814 -
SY-228 Aly-MIR171a Aly-scaffold_5: 15611102-15611233 + Capsella rubella Cru-MIR171a Cru-scaffold_5: 9180071-9180215 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G44270.t1 0.0 NA NA
AL5G42940.t1 0.0 NA NA
AL6G53350.t1 0.0 0 NA
AL1G22890.t1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference