PmiREN: Plant microRNA Encyclopedia

Aly-MIR171b

Basic info.

miRNA locus ID
Aly-MIR171b

miRNA locus accession
PmiREN000465

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_1 4720130 4720253 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATTTTATGTAA   --AA    A      A             A     --   TC    TAAC
           GGT    CGCG GATATT GTGCGGTTCAATC AATAG  TCG  CTCT    
           |||    |||| |||||| ||||||||||||| |||||  |||  ||||     
           CCA    GCGC CTATAA CGTGCCGAGTTAG TTGTT  GGC  GAGG    
AAACGGTAAAA   AATG    A      C             C     GT   TA    TACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-229	Aly-MIR171b	Aly-scaffold_1: 4720130-4720253 -	Capsella rubella	Cru-MIR171b	Cru-scaffold_1: 4060735-4060859 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL4G44270.t1	1.5	NA	NA
AL5G42940.t1	1.5	NA	NA
AL6G53350.t1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR171b

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