Aly-MIR172a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAC     C  T      C                   A   --C   T  T    GG   T  TTC
     GGTCG TG TTGCTG TGTGGCATCATCAAGATTC CAT   TGT GA GGAC  TGG GA   
     ||||| || |||||| ||||||||||||||||||| |||   ||| || ||||  ||| ||   G
     TCGGC AC AACGGC ACGTCGTAGTAGTTCTAAG GTA   GTA CT CTTG  ACC CT   
TCTTA     A  T      T                   A   AAA   T  -    AA   C  CTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-233 Aly-MIR172a Aly-scaffold_4: 12144112-12144245 + Brassica rapa Bra-MIR172i Bra-A03: 12117350-12117484 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G23050.t1 0.5 0 NA
AL71U10070.t1 0.5 0 NA
AL8G36720.t1 0.5 NA NA
AL8G44170.t1 0.5 0 NA
AL8G36710.t2 1.0 0 NA
AL5G36100.t1 1.5 NA NA
AL4G36560.t1 2.0 1 NA
AL5G26530.t1 2.0 2 NA
AL8G43510.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference