Aly-MIR172b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATCT       T    A         C           A    AAAAT  A    T T    A
      GTCGTTG TTGT GGTGCAGCA CATCAAGATTC CATG     TG TAAA C CCTA 
      ||||||| |||| ||||||||| ||||||||||| ||||     || |||| | |||| A
      CGGCAGC AACA CTACGTCGT GTAGTTCTAAG GTAT     AT GTTT G GGAT 
AAACAT       T    A         A           A    -ATGT  A    T -    T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-234 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Arabidopsis thaliana Ath-MIR172b Ath-Chr5: 1188191-1188317 -
SY-235 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica oleracea Bol-MIR172a Bol-C02: 1546875-1547006 -
SY-236 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +
SY-237 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica oleracea Bol-MIR172c Bol-C03: 514956-515091 -
SY-238 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica rapa Bra-MIR172a Bra-A02: 681031-681163 -
SY-239 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-240 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica rapa Bra-MIR172e Bra-A03: 690626-690761 -
SY-241 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Capsella rubella Cru-MIR172d Cru-scaffold_6: 1174066-1174194 -
SY-242 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Eutrema salsugineum Esa-MIR172a Esa-scaffold_2: 1159895-1160021 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G23050.t1 0.5 0 NA
AL71U10070.t1 0.5 0 NA
AL8G36720.t1 0.5 NA NA
AL8G44170.t1 0.5 0 NA
AL8G36710.t2 1.0 0 NA
AL5G36100.t1 1.5 NA NA
AL4G36560.t1 2.0 1 NA
AL5G26530.t1 2.0 2 NA
AL8G43510.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference