Aly-MIR172d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 GC       -GT     A     A    T         AG         TCTTT         TCT
   AGTCATT   TTGCT TTGCA CATC TCAAGATTC  AAATCAGAT     TATGGGTTT   
   |||||||   ||||| ||||| |||| |||||||||  |||||||||     |||||||||    
   TCGGTAA   AACGG GACGT GTAG AGTTCTAAG  TTTGGTTTA     ATATCCGAG   
TAT       ATT     C     C    T         AG         ---TT         TTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-245 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Arabidopsis thaliana Ath-MIR172d Ath-Chr3: 20587901-20588031 +
SY-246 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Brassica rapa Bra-MIR172c Bra-A09: 34969393-34969523 +
SY-247 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Brassica rapa Bra-MIR172f Bra-A04: 2808596-2808726 -
SY-248 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G23050.t1 0.5 0 NA
AL71U10070.t1 0.5 0 NA
AL8G36720.t1 0.5 NA NA
AL8G44170.t1 0.5 0 NA
AL8G36710.t2 1.0 0 NA
AL5G36100.t1 1.5 NA NA
AL4G36560.t1 2.0 1 NA
AL5G26530.t1 2.0 2 NA
AL8G43510.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference