PmiREN: Plant microRNA Encyclopedia

Aly-MIR173b

Basic info.

miRNA locus ID
Aly-MIR173b

miRNA locus accession
PmiREN000474

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_3 10517128 10517242 +

Comments
A member of family MIR173

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   T  G    T  C     A            G      A      T  TCA    TTAA
    GT TTGG GA TAAGT CTTTCGCTTGCA AGAGAA TCACAG GG   AAAG    
    || |||| || ||||| |||||||||||| |||||| |||||| ||   ||||    A
    CA AACC CT GTTCG GAAGGTGAACGT TCTCTT AGTGTC CC   TTTC    
TATT  -    C  C     A            G      -      T  ---    TCTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-255	Aly-MIR173b	Aly-scaffold_3: 10517128-10517242 +	Arabidopsis thaliana	Ath-MIR173	Ath-Chr3: 8236141-8236268 +
SY-256	Aly-MIR173b	Aly-scaffold_3: 10517128-10517242 +	Capsella rubella	Cru-MIR173	Cru-scaffold_3: 8474974-8475092 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G57630.t1	2.0	2	NA
AL4G37090.t1	2.0	2	NA
AL4G37110.t1	2.0	2	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR173b

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