PmiREN: Plant microRNA Encyclopedia

Aly-MIR2111b

Basic info.

miRNA locus ID
Aly-MIR2111b

miRNA locus accession
PmiREN000478

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_6 474781 474903 +

Comments
A member of family MIR2111

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      --     T   C          C         T     ---   T    AG   TTAC
GTACTT  GGTGA GAA GGGTAATCTG ATCCTGAGG TTAAA   ACT TATA  CAT    
||||||  ||||| ||| |||||||||| ||||||||| |||||   ||| ||||  |||     
CATGAA  TCATT CTT TCCATTAGAC TAGGGCTCC AATTT   TGA ATAT  GTG    
      GC     C   C          A         T     TTT   T    CA   TATG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-260	Aly-MIR2111b	Aly-scaffold_6: 474781-474903 +	Arabidopsis thaliana	Ath-MIR2111b	Ath-Chr5: 400382-400504 +
SY-261	Aly-MIR2111b	Aly-scaffold_6: 474781-474903 +	Brassica rapa	Bra-MIR2111e	Bra-A03: 228483-228604 +
SY-262	Aly-MIR2111b	Aly-scaffold_6: 474781-474903 +	Capsella rubella	Cru-MIR2111	Cru-scaffold_6: 342293-342417 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL5G16260.t1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR2111b

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