Aly-MIR319b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
T -     --TT        A  A                 CT       TAATAT    -         -GA      AC        C  AA     A    AA   CA
 G TTGAG    GGTGAAGG AG GAGCTTTCTTCGGTCCA  CATGGAG      GTGA GATTTAATT   CTCTCG  TCATTCAT CA  TACCA ATGA  GAA  
 | |||||    |||||||| || |||||||||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||   
 C GGCTC    TTATTTTT TC CTCGAGGGAAGTCAGGT  GTATCTC      CACT CTGAGTTAA   GAGAGC  AGTAAGTA GT  ATGGT TACT  CTT  
  T     TTTT        A  C                 TC       ----TT    T         ACA      GT        A  AA     A    --   GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-270 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Arabidopsis thaliana Ath-MIR319b Ath-Chr5: 16660449-16660658 -
SY-271 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Brassica rapa Bra-MIR319b Bra-A04: 10646026-10646235 -
SY-272 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Brassica rapa Bra-MIR319e Bra-A07: 15294081-15294290 -
SY-273 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Capsella rubella Cru-MIR319c Cru-scaffold_7: 15441258-15441467 +
SY-274 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Eutrema salsugineum Esa-MIR319b Esa-scaffold_14: 2396373-2396581 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL3G22980.t1 1.5 2 NA
AL4G20230.t1 1.5 2 NA
AL6G16050.t1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference