Aly-MIR390a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
C -A    --      A  T  A          G           TGAT    TTATTT
 A  GTAG  AGAAGA TC GT AAGCTCAGGA GGATAGCGCCA    GATC      
 |  ||||  |||||| || || |||||||||| |||||||||||    ||||       
 T  CATC  TCTTCT GG TA TTTGAGTCCT CCTATCGCGGT    TTAG      
  AA    AT      C  T  C          A           -TTT    CTATAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-278 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Arabidopsis thaliana Ath-MIR390a Ath-Chr2: 16061951-16062063 +
SY-279 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Brassica oleracea Bol-MIR390a Bol-C03: 10279836-10279950 +
SY-280 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Brassica oleracea Bol-MIR390b Bol-C04: 5962629-5962745 +
SY-281 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Brassica rapa Bra-MIR390a Bra-A04: 18745229-18745339 +
SY-282 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Brassica rapa Bra-MIR390b Bra-A05: 3960655-3960767 -
SY-283 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Capsella rubella Cru-MIR390a Cru-scaffold_4: 11117963-11118088 +
SY-284 Aly-MIR390a Aly-scaffold_4: 18611042-18611154 + Eutrema salsugineum Esa-MIR390a Esa-scaffold_10: 9718512-9718623 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL4G35520.t1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference