PmiREN: Plant microRNA Encyclopedia

Aly-MIR390b

Basic info.

miRNA locus ID
Aly-MIR390b

miRNA locus accession
PmiREN000499

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_8 18617958 18618091 +

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AT    -   AAAT      AA         G           -TGA   ACCAA   -    G  TTTG
     AGTA GAA    AGCTAT  AGCTCAGGA GGATAGCGCCA    ATC     TAC TGTA GT    
     |||| |||    ||||||  ||||||||| |||||||||||    |||     ||| |||| ||    T
     TCGT CTT    TCGATA  TTGAGTCCT CCTATCGCGGT    TAG     ATG ACGT CA    
TATAT    T   --CT      CC         A           TGTC   -----   T    A  TATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-285	Aly-MIR390b	Aly-scaffold_8: 18617958-18618091 +	Arabidopsis thaliana	Ath-MIR390b	Ath-Chr5: 23636941-23637074 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL4G35520.t1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIR390b

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