Aly-MIR394a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     T    T     CA   -      TTC            C  --------GT         TA
 AGAG TTCT ACAGA  TCT TTGGCA   TGTCCACCTCCT CT          ACATGTGTG  
 |||| |||| |||||  ||| ||||||   |||||||||||| ||          |||||||||   
 TCTT GGGA TGTCT  AGA AACCGT   ATGGGTGGAGGA GA          TGTGTATAT  
T    T    T     AG   T      CAT            A  AGGTGTGTTT         AT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-302 Aly-MIR394a Aly-scaffold_1: 8699220-8699343 + Arabidopsis thaliana Ath-MIR394a Ath-Chr1: 7058187-7058318 +
SY-303 Aly-MIR394a Aly-scaffold_1: 8699220-8699343 + Arabidopsis thaliana Ath-MIR394b Ath-Chr1: 28568801-28568936 +
SY-304 Aly-MIR394a Aly-scaffold_1: 8699220-8699343 + Capsella rubella Cru-MIR394a Cru-scaffold_1: 7092612-7092742 +
SY-305 Aly-MIR394a Aly-scaffold_1: 8699220-8699343 + Capsella rubella Cru-MIR394b Cru-scaffold_2: 12220763-12220903 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AL1G40740.t1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference