Aly-MIR399b

Basic info.

• miRNA locus ID
• Aly-MIR399b

• miRNA locus accession
• PmiREN000518

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_2  1307900  1308044  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 ATGT     -C  A            C      A          CTTTATTTCCAAATATACACATAC          ATA   A
     AAGCT  AC AGTTTTAGGGCG CTCTCC TTGGCAGGTC                        ATATATGAAT   GAA 
     |||||  || |||||||||||| |||||| ||||||||||                        ||||||||||   ||| A
     TTCGA  TG TCAAAGTCCCGT GAGAGG AACCGTCCAG                        TATATATTTA   CTT 
ATTAA     CT  G            T      A          ------------------------          --G   T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference