Aly-MIR399c

Basic info.

• miRNA locus ID
• Aly-MIR399c

• miRNA locus accession
• PmiREN000519

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_8  20345017  20345148  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 CTA        - C   A        T      A        A   TC     TTT  ATCTTTTG
    TAAGCGGA G AGT ATAGGGCA CTTTCT TTGGCAGG GAC  GGCTA   GT        
    |||||||| | ||| |||||||| |||||| |||||||| |||  |||||   ||         
    ATTCGCCT C TCA TGTCCCGT GAGAGG AACCGTTC CTG  TCGGT   CG        
ACAA        T A   C        T      A        A   TA     TAT  GTTCTTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference