Aly-MIR399a

Basic info.

• miRNA locus ID
• Aly-MIR399a

• miRNA locus accession
• PmiREN000520

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_1  12890916  12891053  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

AAA ----   G AAT --T -    A -    A       A -       A -  CA         T TT --    CTC
   G    GTG A   G   A TTAC G GGTA GATCTCT T TGGCAGG A AC  TTACTTAGA C  T  GCAT   
   |    ||| |   |   | |||| | |||| ||||||| | ||||||| | ||  ||||||||| |  |  ||||   T
   T    CCA C   T   C TAAT G CCCG TTTAGAG G AACCGTC T TT  GAGTGAATT T  G  ACGT   
    ATAA   - --G CTT T    - G    -       - A       - C  --         - TC TT    ATT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3156
• Chromosome: Aly-scaffold_1
• Cluster start: 12884715
• Cluster end: 12891053

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference