Aly-MIR825

Basic info.

• miRNA locus ID
• Aly-MIR825

• miRNA locus accession
• PmiREN000548

• Organism
• Arabidopsis lyrata

• Genomic location
• Aly-scaffold_4  6095665  6095792  +

• Comments
• A member of family MIR825

• Confidence level
• 

Secondary strurture and sequence

  GATTGATTCC       C     A     AG     A           AA   --    TAGAA
            ATCAACT GTTCA GCACC  CTCGA GAAGCGTAGCT  TTT  ATCT     
            ||||||| ||||| |||||  ||||| |||||||||||  |||  ||||     A
            TAGTTGA CAAGT CGTGG  GAGCT CTTCGCATCGA  AAG  TAGG     
TAGTTTTATACG       A     A     AA     -           AA   TT    TACTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference