PmiREN: Plant microRNA Encyclopedia

Aly-MIRN123a

Basic info.

miRNA locus ID
Aly-MIRN123a

miRNA locus accession
PmiREN000620

Organism
Arabidopsis lyrata

Genomic location
Aly-scaffold_4 18166631 18166757 +

Comments
A member of family MIRN123

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AAA      A  G           G   AC    C   C  AA    C     AG    ACGA
      AAGAAG GG TAGAAATATCT CCG  TCAT CAT CA  CACT GTGGT  AGAA    
      |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||     
      TTCTTC CT GTTTTTATAGA GGC  AGTA GTA GT  GTGA CGCCA  TTTT    
GTCTAT      -  A           G   GT    A   T  CA    -     AA    AACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-381	Aly-MIRN123a	Aly-scaffold_4: 18166631-18166757 +	Arabidopsis lyrata	Aly-MIRN123b	Aly-scaffold_4: 19899206-19899332 +
SY-382	Aly-MIRN123a	Aly-scaffold_4: 18166631-18166757 +	Arabidopsis thaliana	Ath-MIR319c	Ath-Chr2: 17029693-17029909 +
SY-383	Aly-MIRN123a	Aly-scaffold_4: 18166631-18166757 +	Capsella rubella	Cru-MIR319a	Cru-scaffold_4: 12176944-12177161 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AL1G42280.t1	2.0	2	NA

Mature miRNA conservation

Link

Reference

No reference

Aly-MIRN123a

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