Ath-MIR159c

Basic info.

• miRNA locus ID
• Ath-MIR159c

• miRNA locus accession
• PmiREN000649

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr2  18994625  18994865  +

• Comments
• A member of family MIR159

• Confidence level
• 

Secondary strurture and sequence

  TCTTCAAGTGTAAC                -C      A         --C  -   T  A   ACTAAAAT C            T  A   CT     A     A    GCGGTG    AA
                AGAAGGAGCTCCCTTC  TCCAAA CGAAGAGGA   AA GAT TG GGA        G AGAATCTAAGAG TC TGT  TCCTC TAGAG GTGC      TTAA  
                ||||||||||||||||  |||||| |||||||||   || ||| || |||        | |||||||||||| || |||  ||||| ||||| ||||      ||||   
                TTTTCCTCGAGGGAAG  AGGTTT GCTTCTCTT   TT CTA AC TCT        C TCTTAGATTCTC AG ACG  AGGGG ATTTC CACG      AGTT  
ATTAATTCTCTTCTTC                TT      -         CTC  A   T  A   CTTTCTCC -            C  C   TT     A     A    -AAAGA    CG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. Mol Genet Genomics, 2019
• >An improved method for rapid analysis of promoters using modified sonication-assisted transient assay. 3 Biotech, 2018
• >miR394 Acts as a Negative Regulator of Arabidopsis Resistance to B. cinerea Infection by Targeting LCR. Front Plant Sci, 2018
• >Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.). BMC Plant Biol, 2017
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017
• >Repression of miR156 by miR159 Regulates the Timing of the Juvenile-to-Adult Transition in Arabidopsis. Plant Cell, 2017
• >Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101. Plant Sci, 2017
• >Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol, 2015
• >Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues. BMC Plant Biol, 2015
• >The role of microRNAs in the control of flowering time. J Exp Bot, 2014
• >Using a viral vector to reveal the role of microRNA159 in disease symptom induction by a severe strain of Cucumber mosaic virus. Plant Physiol, 2014
• >Coordination of flower maturation by a regulatory circuit of three microRNAs. PLoS Genet, 2013
• >The anaphase-promoting complex is a dual integrator that regulates both MicroRNA-mediated transcriptional regulation of cyclin B1 and degradation of Cyclin B1 during Arabidopsis male gametophyte development. Plant Cell, 2011
• >The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis. Plant Physiol, 2010
• >A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159. EMBO J, 2009
• >ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J, 2007
• >Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat Biotechnol, 2006
• >Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim Biophys Sin, 2005