Ath-MIR160a

Basic info.

• miRNA locus ID
• Ath-MIR160a

• miRNA locus accession
• PmiREN000650

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr2  16340262  16340382  +

• Comments
• A member of family MIR160

• Confidence level
• 

Secondary strurture and sequence

               TATATAT      C       C          AT  T   CC      G
     GTATATGTAT       GTATGC TGGCTCC TGTATGCCAT  GC GAG  CATCGA 
     ||||||||||       |||||| ||||||| ||||||||||  || |||  |||||| T
     TATATACATA       TATACG ACCGAGG GTATGCGGTA  TG CTC  GTAGCT 
ATTAA          ---CTCC      T       A          GG  C   CA      A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Enhanced Arabidopsis disease resistance against Botrytis cinerea induced by sulfur dioxide. Ecotoxicol Environ Saf, 2018
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017
• >Genome-Wide Profiling of Small RNAs and Degradome Revealed Conserved Regulations of miRNAs on Auxin-Responsive Genes during Fruit Enlargement in Peaches. Int J Mol Sci, 2017
• >Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana. Plant J, 2016
• >The involvement of InMIR167 in the regulation of expression of its target gene InARF8, and their participation in the vegetative and generative development of Ipomoea nil plants. J Plant Physiol, 2014
• >Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants. Plant Physiol, 2013
• >A set of Arabidopsis thaliana miRNAs involve shoot regeneration in vitro. Plant Signal Behav, 2013
• >Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell, 2012
• >Proper regeneration from in vitro cultured Arabidopsis thaliana requires the microRNA-directed action of an auxin response factor. Plant J, 2012
• >Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Sci, 2012
• >The N-terminal double-stranded RNA binding domains of Arabidopsis HYPONASTIC LEAVES1 are sufficient for pre-microRNA processing. Plant Cell, 2007
• >Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J, 2007
• >Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell, 2005
• >MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell, 2005