Ath-MIR165a

Basic info.

• miRNA locus ID
• Ath-MIR165a

• miRNA locus accession
• PmiREN000660

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr1  78912  79050  -

• Comments
• A member of family MIR165

• Confidence level
• 

Secondary strurture and sequence

T  --A  T  TT  -    A    A   TT      A           -ATA      TACATGTGTATGT
 TA   GC AT  CA GTTG GGGG ATG  GTCTGG TCGAGGATATT    GATATA             
 ||   || ||  || |||| |||| |||  |||||| |||||||||||    ||||||              
 GT   CG TA  GT CAAC CCCC TAC  CGGACC GGCTCCTATGA    TACTAG             
   CTC  T  TT  A    C    C   TT      A           GAGA      TGAACTTAGTAAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Continuous root xylem formation and vascular acclimation to water deficit involves endodermal ABA signalling via miR165. Development, 2018
• >Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development, 2018
• >Association of microRNAs with Types of Leaf Curvature in Brassica rapa. Front Plant Sci, 2018
• >Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol, 2018
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >ARGONAUTE10 Inhibits In Vitro Shoot Regeneration Via Repression of miR165/166 in Arabidopsis thaliana. Plant Cell Physiol, 2017
• >The miR165/166 Mediated Regulatory Module Plays Critical Roles in ABA Homeostasis and Response in Arabidopsis thaliana. PLoS Genet, 2016
• >A molecular mechanism that confines the activity pattern of miR165 in Arabidopsis leaf primordia. Plant J, 2015
• >Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis. Plant J, 2015
• >An improved cucumber mosaic virus-based vector for efficient decoying of plant microRNAs. Sci Rep, 2015
• >HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J Exp Bot, 2013
• >Long-range genomic enrichment, sequencing, and assembly to determine unknown sequences flanking a known microRNA. PLoS One, 2013
• >Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis. Plant Cell, 2007
• >The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development. Plant Cell, 2005