Ath-MIR166g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GAAGCGATTTA     T  A      TT      C      -    GG     AATTC   AA
             GGGTT AG GGAATG  GTTTGG TCGAGG TCAT  AGAGT     GTT  
             ||||| || ||||||  |||||| |||||| ||||  |||||     |||  C
             TCCAA TC CCTTAC  CGGACC GGCTCT AGTA  TCTCA     CAA  
TTACGCTATTTTA     C  C      TT      A      T    AA     AAACT   CC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-140 Aly-MIR166g Aly-scaffold_8: 21095447-21095574 + Arabidopsis thaliana Ath-MIR166g Ath-Chr5: 25504795-25504922 +
SY-518 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Brassica rapa Bra-MIR165a Bra-A06: 19223499-19223626 +
SY-519 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Capsella rubella Cru-MIR166c Cru-scaffold_6: 2828675-2828826 +
SY-520 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Capsella rubella Cru-MIR166g Cru-scaffold_8: 11863928-11864056 +
SY-521 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Eutrema salsugineum Esa-MIR166e Esa-scaffold_2: 2890642-2890782 +
SY-522 Ath-MIR166g Ath-Chr5: 25504795-25504922 + Eutrema salsugineum Esa-MIR166h Esa-scaffold_6: 1539129-1539256 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT3G48610.1 4.5 NA 0 (2)
AT2G41630.1 4.0 NA 2 (3)
AT4G25710.1 NA NA 2 (1)
AT5G17690.1 NA NA 2 (1)
AT1G52150.2 0.5 NA NA
AT1G30490.1 1.0 NA NA
AT2G34710.1 1.0 NA NA
AT4G32880.1 1.0 NA NA
AT5G60690.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference