Ath-MIR172a

Basic info.

• miRNA locus ID
• Ath-MIR172a

• miRNA locus accession
• PmiREN000692

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr2  11942898  11943031  -

• Comments
• A member of family MIR172

• Confidence level
• 

Secondary strurture and sequence

  CAC        TTG    C                   A   CTG   ATGGACGGTGGTGATTCAC
     GGTCGTTG   GCTG TGTGGCATCATCAAGATTC CAT   TTG                   
     ||||||||   |||| ||||||||||||||||||| |||   |||                    
     TCAGCAAC   CGGC ACGTCGTAGTAGTTCTAAG GTA   AAG                   
TCTTA        TAA    T                   A   --A   TATCTCTTGAAACACCTCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Leaf heteroblasty in Passiflora edulis as revealed by metabolic profiling and expression analyses of the microRNAs miR156 and miR172. Ann Bot, 2019
• >A spatiotemporally regulated transcriptional complex underlies heteroblastic development of leaf hairs in Arabidopsis thaliana. EMBO J, 2019
• >miR394 Acts as a Negative Regulator of Arabidopsis Resistance to B. cinerea Infection by Targeting LCR. Front Plant Sci, 2018
• >A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana. New Phytol, 2018
• >Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum. BMC Plant Biol, 2017
• >Over-Expression of GmGIa-Regulated Soybean miR172a Confers Early Flowering in Transgenic Arabidopsis thaliana. Int J Mol Sci, 2016
• >Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana. J Exp Bot, 2016
• >DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways. Proc Natl Acad Sci, 2016
• >Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis. Plant Physiol, 2015
• >Correction: the suppression of WRKY44 by GIGANTEA-miR172 pathway is involved in drought response of Arabidopsis thaliana. PLoS One, 2015
• >Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis. Sci Rep, 2015
• >Global small RNA analysis in fast-growing Arabidopsis thaliana with elevated concentrations of ATP and sugars. BMC Genomics, 2014
• >Genetic and epigenetic changes in a genomic region containing MIR172 in Arabidopsis allopolyploids and their progenitors. Heredity, 2014
• >miR168 influences phase transition, leaf epinasty, and fruit development via SlAGO1s in tomato. J Exp Bot, 2014
• >The role of microRNAs in the control of flowering time. J Exp Bot, 2014
• >Recovery of dicer-like 1-late flowering phenotype by miR172 expressed by the noncanonical DCL4-dependent biogenesis pathway. RNA, 2014
• >The suppression of WRKY44 by GIGANTEA-miR172 pathway is involved in drought response of Arabidopsis thaliana. PLoS One, 2013
• >Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina. Science, 2013
• >Molecular basis of age-dependent vernalization in Cardamine flexuosa. Science, 2013
• >SoMART: a web server for plant miRNA, tasiRNA and target gene analysis. Plant J, 2012
• >LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers. Development, 2011
• >The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice. Plant Cell, 2011
• >miRNA control of vegetative phase change in trees. PLoS Genet, 2011
• >On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development, 2010
• >Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell, 2010
• >Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proc Natl Acad Sci, 2010
• >The putative miR172 target gene InAPETALA2-like is involved in the photoperiodic flower induction of Ipomoea nil. J Plant Physiol, 2009
• >Molecular evolution of the AP2 subfamily. Gene, 2006
• >Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa. Acta Biochim Biophys Sin, 2005
• >Dissection of floral induction pathways using global expression analysis. Development, 2003