Ath-MIR319a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TTA        TAT T     --          G      T   C   TC  G T           A -  T   AC        C  AA  C      GCCAAAAT
    GGAATATA   G AGAGA  GAGCTTCCTT AGTCCA TCA AGG  GT A ATGATTCAATT G CT CCG  TCATTCAT CA  TA CGAGTC        
    ||||||||   | |||||  |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||         
    CCTTATGT   C TCTCT  CTCGAGGGAA TCAGGT AGT TCT  TA T TACTAGGTTAA C GA GGC  AGTAAGTA GT  AT GCTCAG        
TTAA        TTT -     CC          G      T   T   CT  G -           A A  T   GT        A  AA  T      ATCAAACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-263 Aly-MIR319a Aly-scaffold_7: 7941292-7941501 - Arabidopsis thaliana Ath-MIR319a Ath-Chr4: 12352940-12353149 +
SY-615 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica oleracea Bol-MIR319a Bol-C01: 10405597-10405806 +
SY-616 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica oleracea Bol-MIR319b Bol-C07: 43171718-43171928 +
SY-617 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-618 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica rapa Bra-MIR319d Bra-Scaffold25053: 101079-101289 +
SY-619 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Capsella rubella Cru-MIR319b Cru-scaffold_7: 6507492-6507703 -
SY-620 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Eutrema salsugineum Esa-MIR319c Esa-scaffold_1: 6999831-7000041 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G30210.1 2.5 2 0 (1)
AT3G15030.1 2.5 NA 0 (2)
AT1G53230.1 3.0 NA 0 (4)
AT4G18390.1 2.5 2 2 (2)
AT1G69220.1 NA NA 2 (1)
AT2G20830.2 NA NA 2 (3)
AT3G02760.1 NA NA 2 (1)
AT3G14000.1 NA NA 2 (1)
AT4G39850.3 NA NA 2 (1)
AT5G18065.1 NA NA 2 (1)
AT5G19540.1 NA NA 2 (2)
AT2G26950.1 1.5 2 NA
AT3G11440.1 1.5 NA NA
AT5G06100.2 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference