Ath-MIR393a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAT   A   A     A              C    T     -T       ---------    -ATTCTCC   T   TTCT
     AGC ACT GAGGA GGATCCAAAGGGAT GCAT GATCC  AATTAAG         GTGA        CCA ATT    
     ||| ||| ||||| |||||||||||||| |||| |||||  |||||||         ||||        ||| |||     
     TCG TGG TTCCT CTTAGGTTTCTCTA CGTA CTAGG  TTGGTTC         CACT        GGT TAA    
CTCCT   A   C     A              T    -     TT       GTTTAAAAA    AAATAAAC   -   TATT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-290 Aly-MIR393a Aly-scaffold_4: 19396116-19396270 + Arabidopsis thaliana Ath-MIR393a Ath-Chr2: 16652091-16652245 +
SY-297 Aly-MIR393b Aly-scaffold_5: 17660783-17660959 + Arabidopsis thaliana Ath-MIR393a Ath-Chr2: 16652091-16652245 +
SY-641 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Arabidopsis thaliana Ath-MIR393b Ath-Chr3: 20691637-20691818 +
SY-642 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Brassica rapa Bra-MIR393a Bra-A04: 19205419-19205573 +
SY-643 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Brassica rapa Bra-MIR393b Bra-A05: 3291935-3292095 -
SY-644 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Capsella rubella Cru-MIR393a Cru-scaffold_4: 11771167-11771330 +
SY-645 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Eutrema salsugineum Esa-MIR393a Esa-scaffold_10: 10483751-10483910 +
SY-646 Ath-MIR393a Ath-Chr2: 16652091-16652245 + Eutrema salsugineum Esa-MIR393b Esa-scaffold_16: 74485-74658 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT3G62980.1 1.0 NA 2 (3)
AT3G23690.1 2.5 1 2 (3)
AT2G44310.1 NA NA 2 (3)
AT1G12820.1 1.0 NA NA
AT3G26810.1 1.0 NA NA
AT4G03190.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference