Ath-MIR396a

Basic info.

• miRNA locus ID
• Ath-MIR396a

• miRNA locus accession
• PmiREN000722

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr2  4142311  4142483  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  ACA    C  C        C            C            A -T  -TT    TTTTTTTTTTTT  TTTTGATATCTCTTACGCA
     TGAC CT TCTGTATT TTCCACAGCTTT TTGAACTGCAAA C  TC   CAGA            TC                   
     |||| || |||||||| |||||||||||| |||||||||||| |  ||   ||||            ||                    
     ACTG GA AGACATAG AGGGTGTCGAAA AACTTGGCGTTT G  AG   GTCT            TA                   
AGTAA    A  C        A            T            A TT  CTC    ---------CTA  CTTCTTTTAGTGATAAAAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >GROWTH-REGULATING FACTOR and GRF-INTERACTING FACTOR Specify Meristematic Cells of Gynoecia and Anthers. Plant Physiol, 2018
• >Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions. Sci Rep, 2018
• >MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017
• >The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens. Sci Rep, 2017
• >Control of cell proliferation by microRNAs in plants. Curr Opin Plant Biol, 2016
• >Divergence in Patterns of Leaf Growth Polarity Is Associated with the Expression Divergence of miR396. Plant Cell, 2015
• >MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots. Plant Cell, 2015
• >MicroRNA396-Targeted SHORT VEGETATIVE PHASE Is Required to Repress Flowering and Is Related to the Development of Abnormal Flower Symptoms by the Phyllody Symptoms1 Effector. Plant Physiol, 2015
• >miR396a-Mediated basic helix-loop-helix transcription factor bHLH74 repression acts as a regulator for root growth in Arabidopsis seedlings. Plant Cell Physiol, 2014
• >Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Plant J, 2014
• >Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013
• >The Arabidopsis microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection. Plant Physiol, 2012
• >Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions. PLoS Genet, 2012
• >Functional characterization of plant small RNAs based on next-generation sequencing data. Comput Biol Chem, 2010
• >Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development, 2010
• >Over-expression of osa-MIR396c decreases salt and alkali stress tolerance. Planta, 2010
• >Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA, 2008