PmiREN: Plant microRNA Encyclopedia

Ath-MIR408

Basic info.

miRNA locus ID
Ath-MIR408

miRNA locus accession
PmiREN000737

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr2 19319846 19319974 +

Comments
A member of family MIR408

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAAGCGGTAAT     A   A       CAA    A      ATT   TTT  T      TTAAA
             GAGAG GAG CAGGGAA   GCAG GCATGG   GAG   AC AAAACA     
             ||||| ||| |||||||   |||| ||||||   |||   || ||||||     C
             TTCTC CTC GTCCCTT   CGTC CGTACC   CTC   TG TTTTGT     
TATATCTCTTTTT     C   G       CTC    A      CAT   ---  -      CTCAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-364	Aly-MIR408	Aly-scaffold_4: 22869881-22870007 +	Arabidopsis thaliana	Ath-MIR408	Ath-Chr2: 19319846-19319974 +
SY-707	Ath-MIR408	Ath-Chr2: 19319846-19319974 +	Brassica rapa	Bra-MIR408	Bra-A05: 469138-469268 -
SY-708	Ath-MIR408	Ath-Chr2: 19319846-19319974 +	Capsella rubella	Cru-MIR408	Cru-scaffold_4: 14640170-14640296 +
SY-709	Ath-MIR408	Ath-Chr2: 19319846-19319974 +	Eutrema salsugineum	Esa-MIR408	Esa-scaffold_22: 1478341-1478467 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT2G02850.1	2.0	0	0 (3)
AT1G72230.1	3.5	2	0 (3)
AT2G44790.1	4.5	2	0 (3)
AT4G35510.1	NA	NA	1 (1)
AT2G47020.1	0.0	0	2 (3)
AT3G02200.2	3.5	2	2 (3)
AT4G16630.1	4.0	NA	2 (3)
AT5G21930.1	4.0	NA	2 (3)
AT1G15830.1	4.5	1	2 (2)
AT1G01100.1	NA	NA	2 (3)
AT1G02500.1	NA	NA	2 (1)
AT1G13000.1	NA	NA	2 (3)
AT1G22360.1	NA	2	2 (3)
AT1G23130.1	NA	NA	2 (3)
AT1G27695.1	NA	NA	2 (3)
AT1G61140.1	NA	NA	2 (2)
AT1G79830.4	NA	NA	2 (3)
AT2G25670.1	NA	NA	2 (2)
AT3G26720.1	NA	NA	2 (3)
AT3G50370.1	NA	NA	2 (3)
AT3G60530.1	NA	NA	2 (3)
AT4G13850.1	NA	NA	2 (3)
AT4G14540.1	NA	NA	2 (3)
AT4G21750.1	NA	NA	2 (3)
AT4G26480.1	NA	NA	2 (3)
AT4G34200.1	NA	NA	2 (2)
AT5G45130.1	NA	NA	2 (3)
AT5G51720.1	NA	NA	2 (3)
AT5G53480.1	NA	NA	2 (2)
AT5G58420.1	NA	NA	2 (3)
AT5G65940.1	NA	NA	2 (2)