PmiREN: Plant microRNA Encyclopedia

Ath-MIR858

Basic info.

miRNA locus ID
Ath-MIR858

miRNA locus accession
PmiREN000816

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr1 26773532 26773735 -

Comments
A member of family MIR858

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTTATGTGT     ----  -TTT      -         CG           G   TCTCCTCA     CT    C   CTTTATCGTTTATTTCATTCATCCATCCT
         TCTCA    TC    GTTTCG TTGTCTGTT  ACCTTGGTCTC ATC        AAACC  AATA GCG                             
         |||||    ||    |||||| |||||||||  ||||||||||| |||        |||||  |||| |||                              
         GGAGT    AG    CAAAGC AGCAGATAG  TGGGGTTAGGG TAG        TTTGG  TATT TGG                             
   TTTTTT     CTTT  TTTT      T         -A           G   --TTATTG     -C    -   TACATGCAATCAAATACTACTAGTATTCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-714	Ath-MIR858	Ath-Chr1: 26773532-26773735 -	Brassica rapa	Bra-MIR858a	Bra-A07: 23885177-23885290 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G06180.1	1.0	2	2 (3)
AT1G66230.1	2.0	NA	2 (3)
AT1G06690.1	3.5	NA	2 (2)
AT1G55805.1	4.0	NA	2 (1)
AT4G02990.1	4.5	NA	2 (2)
AT4G25640.2	4.5	NA	2 (3)
AT3G25805.1	5.0	NA	2 (3)
AT2G26190.1	NA	NA	2 (1)
AT2G40100.1	NA	NA	2 (2)
AT3G02490.1	NA	NA	2 (1)
AT3G04740.1	NA	NA	2 (2)
AT3G16780.1	NA	NA	2 (3)
AT3G23620.1	NA	NA	2 (3)
AT3G23830.1	NA	NA	2 (1)
AT3G49220.1	NA	NA	2 (2)
AT3G53920.1	NA	NA	2 (1)
AT3G56990.1	NA	NA	2 (2)
AT4G10710.1	NA	NA	2 (2)
AT4G20890.1	NA	NA	2 (3)
AT4G23460.1	NA	NA	2 (2)
AT4G25960.1	NA	NA	2 (1)
AT4G29030.1	NA	NA	2 (3)
AT4G37608.1	NA	NA	2 (1)
AT5G03140.1	NA	NA	2 (3)
AT5G23540.1	NA	NA	2 (3)
AT5G44340.1	NA	NA	2 (3)
AT5G50960.1	NA	NA	2 (1)
AT5G61270.1	NA	NA	2 (2)
ATMG00730.1	NA	NA	2 (2)
AT2G26950.1	1.0	1	NA
AT3G08500.1	1.5	2	NA
AT3G11440.1	1.5	NA	NA
AT5G14340.1	1.5	1	NA
AT5G35550.1	1.5	2	NA
AT1G79180.1	2.0	2	NA
AT2G47460.1	2.0	NA	NA
AT3G24310.1	2.0	2	NA
AT3G62610.1	2.0	2	NA
AT4G12350.1	2.0	2	NA
AT5G49330.1	2.0	2	NA

Mature miRNA conservation

Link

Reference

>MiR858-Mediated Regulation of Flavonoid-Specific MYB Transcription Factor Genes Controls Resistance to Pathogen Infection in Arabidopsis. Plant Cell Physiol, 2018

>Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism. Plant Physiol, 2017