PmiREN: Plant microRNA Encyclopedia

Bdi-MIR171c

Basic info.

miRNA locus ID
Bdi-MIR171c

miRNA locus accession
PmiREN001116

Organism
Brachypodium distachyon

Genomic location
Bdi-Bd5 24869588 24869706 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTAATGTATTAT     C                       A  CT  C     GGACG
              AGACG GGTATTGGTGCGGTTCAATCAGA AG  GG GCTCC     
              ||||| ||||||||||||||||||||||| ||  || |||||      
              TTTGC CTATAACCGTGCCGAGTTAGTTT TC  CC TGGGG     
TATGCTCAGTTCGT     A                       C  -T  T     AAAAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1475	Bdi-MIR171c	Bdi-Bd5: 24869588-24869706 -	Oryza nivara	Oni-MIR171d	Oni-4: 24707982-24708098 -
SY-1476	Bdi-MIR171c	Bdi-Bd5: 24869588-24869706 -	Oryza sativa	Osa-MIR171c	Osa-Chr4: 31713462-31713578 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Bradi1g52240.1	0.5	NA	NA
Bradi3g50930.3	0.5	NA	NA
Bradi1g09633.1	1.0	NA	NA
Bradi1g78230.1	1.0	NA	NA
Bradi3g32890.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bdi-MIR171c

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