Bdi-MIR171d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    -      T   C    T         T  A    C     C     CG    --    GAT  GTG
  TG ATGAAA GGC ACTA GATGTTGGC CG CTCA TCAGA GACAC  GCCG  GAGC   GC   
  || |||||| ||| |||| ||||||||| || |||| ||||| |||||  ||||  ||||   ||    
  AC TACTTT TCG TGAT CTATAACCG GC GAGT AGTCT TTGTG  CGGC  CTCG   CG   
AT  G      C   -    T         T  C    T     -     --    AG    -AT  TGC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1477 Bdi-MIR171d Bdi-Bd1: 73000902-73001031 - Oryza nivara Oni-MIR171c Oni-3: 1642738-1642874 +
SY-1478 Bdi-MIR171d Bdi-Bd1: 73000902-73001031 - Oryza sativa Osa-MIR171e Osa-Chr3: 1970479-1970615 +
SY-1479 Bdi-MIR171d Bdi-Bd1: 73000902-73001031 - Zea mays Zma-MIR171e Zma-1: 7950199-7950323 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bradi1g52240.1 0.5 NA NA
Bradi3g50930.3 0.5 NA NA
Bradi1g09633.1 1.0 NA NA
Bradi1g78230.1 1.0 NA NA
Bradi3g32890.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference