PmiREN: Plant microRNA Encyclopedia

Bdi-MIR171e

Basic info.

miRNA locus ID
Bdi-MIR171e

miRNA locus accession
PmiREN001118

Organism
Brachypodium distachyon

Genomic location
Bdi-Bd1 30950292 30950407 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CCATGCAA         --C          A         C     T        -  TC
        TGGAAGGAG   GATATTGGTG GGTTCAATC GATGC AGATTTTA CA  
        |||||||||   |||||||||| ||||||||| ||||| |||||||| ||   
        ATCTTCTTC   CTATAACCGT CCGAGTTAG CTATG TCTAGAAT GT  
AAGCTGTA         TCT          G         T     -        T  GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1480	Bdi-MIR171e	Bdi-Bd1: 30950292-30950407 -	Oryza sativa	Osa-MIR171a	Osa-Chr6: 25891120-25891241 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Bradi1g52240.1	0.5	NA	NA
Bradi3g50930.3	0.5	NA	NA
Bradi1g09633.1	1.0	NA	NA
Bradi1g78230.1	1.0	NA	NA
Bradi3g32890.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Bdi-MIR171e

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