Bol-MIR164b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AG      TGC  AG  A     A    CA         CATT         TCTCTTAGTC     -A       -    -CC  A   CA
    AAGGTG   TG  CA GATGG GAAG  GGGCACGTG    ACTAACTCA          CACAT  TATACAC TCTC   CA ATG  
    ||||||   ||  || ||||| ||||  |||||||||    |||||||||          |||||  ||||||| ||||   || |||   
    TTCCAC   AC  GT CTACC CTTC  CCCGTGTAC    TGATTGAGT          GTGTG  GTGTGTG AGAG   GT TAT  
GTAG      TTC  CA  A     C    TA         TTCT         ---------T     AA       T    ATA  A   GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-92 Aly-MIR164b Aly-scaffold_6: 111763-111961 - Brassica oleracea Bol-MIR164b Bol-C02: 55672-55845 -
SY-759 Bol-MIR164b Bol-C02: 55672-55845 - Brassica rapa Bra-MIR164f Bra-A02: 100977-101150 -
SY-760 Bol-MIR164b Bol-C02: 55672-55845 - Capsella rubella Cru-MIR164c Cru-scaffold_6: 26048-26250 -
SY-761 Bol-MIR164b Bol-C02: 55672-55845 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol011125 0.5 0 NA
Bol017015 0.5 0 NA
Bol024555 0.5 0 NA
Bol043898 0.5 0 NA
Bol010251 1.0 1 NA
Bol017224 1.0 1 NA
Bol025747 1.0 1 NA
Bol035498 1.0 1 NA
Bol012152 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference