Bol-MIR169c

Basic info.

• miRNA locus ID
• Bol-MIR169c

• miRNA locus accession
• PmiREN002345

• Organism
• Brassica oleracea

• Genomic location
• Bol-C06  21189916  21190035  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

  GAAAAATAGAAAATGATATT         AT   G     ACTA      CTA   TAATG
                      GAGCCAAAG  GAC TGCCG    TACCAA   ATC     
                      |||||||||  ||| |||||    ||||||   |||      
                      CTCGGTTTC  TTG ACGGC    GTGGTT   TAG     
AACTTTTCTTCTCTTCCTTTGT         AG   A     --CA      --A   TCAAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3268
• Chromosome: Bol-C06
• Cluster start: 21189916
• Cluster end: 21190315

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013