Bra-MIR166d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CTCTGAGCCAA     C   T      T      C    -GAC     --AA   G        G  GT
             AAGTT AGG GGATGA GCTTGG TCGA    CATTA    TAT ATCATTGT AT  
             ||||| ||| |||||| |||||| ||||    |||||    ||| |||||||| ||   
             TTCAA TCC CTTACT CGGACC GGCT    GTAAT    ATA TAGTAGTA TA  
TGCGTTTTGCACA     C   C      T      A    GATA     AGTA   G        G  GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-148 Aly-MIR166h Aly-scaffold_8: 4172042-4172170 - Brassica rapa Bra-MIR166d Bra-A06: 28654444-28654580 -
SY-516 Ath-MIR166f Ath-Chr5: 17516290-17516418 + Brassica rapa Bra-MIR166d Bra-A06: 28654444-28654580 -
SY-781 Bol-MIR166b Bol-C07: 78288-78427 - Brassica rapa Bra-MIR166d Bra-A06: 28654444-28654580 -
SY-974 Bra-MIR166d Bra-A06: 28654444-28654580 - Capsella rubella Cru-MIR166f Cru-scaffold_8: 2201917-2202031 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.F00211.1 0.5 NA NA
Brara.H00179.1 0.5 NA NA
Brara.B01017.1 1.0 NA NA
Brara.D02105.1 1.0 NA NA
Brara.I02808.1 1.0 NA NA
Brara.J01422.1 1.0 NA NA
Brara.K00217.1 1.0 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference