Bra-MIR167c

Basic info.

• miRNA locus ID
• Bra-MIR167c

• miRNA locus accession
• PmiREN002439

• Organism
• Brassica rapa

• Genomic location
• Bra-A09  12549145  12549274  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

   A  G   C    G  T T A           G        TAA       ------C         T
    GA GCG ACCA CA C G TGAAGCTGCCA CATGATCT   CTTCTCT       TCTATATAT 
    || ||| |||| || | | ||||||||||| ||||||||   |||||||       ||||||||| A
    CT CGT TGGT GT G C ACTTTGACGGT GTACTAGA   GAAGGGA       AGATGTATA 
ATAA  A   -    A  T C C           -        CTA       CTAGTTT         T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019