Bra-MIR169m

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  -C         C     -T   A        T    T     -CT    TTC    C  -C        TTTATACGTTGAAG                    TC
 G  GAAAAGAGT GTGTT  AGT GCCAAGGA GACT GCCTG   CTTG   ACCT CA  GATTCAAC              GGTTTTGGATTATTGTGCAT  
 |  ||||||||| |||||  ||| |||||||| |||| |||||   ||||   |||| ||  ||||||||              ||||||||||||||||||||  A
 C  CTTTTTTCA TACAG  TTA CGGTTCCT CTGA CGGAC   GGAT   TGGG GT  CTAAGTTG              CTAAAGTTTAATAATATGTA  
C TA         -     TT   G        -    -     TTT    ---    T  TT        ------------TA                    CA

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Bra-MIR169k ,   Bra-MIR169m PmiREN002457, PmiREN002459 Bra-A06 + 25527117 25527663

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-577 Ath-MIR169j Ath-Chr3: 9872336-9872523 - Brassica rapa Bra-MIR169m Bra-A06: 25527117-25527308 +
SY-1012 Bra-MIR169e Bra-A02: 27317508-27317695 - Brassica rapa Bra-MIR169m Bra-A06: 25527117-25527308 +
SY-1028 Bra-MIR169m Bra-A06: 25527117-25527308 + Brassica rapa Bra-MIR169p Bra-A09: 1477043-1477232 -
SY-1029 Bra-MIR169m Bra-A06: 25527117-25527308 + Capsella rubella Cru-MIR169e Cru-scaffold_5: 1969964-1970154 -
SY-1030 Bra-MIR169m Bra-A06: 25527117-25527308 + Eutrema salsugineum Esa-MIR169d Esa-scaffold_6: 6265076-6265266 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03216.1 1.0 1 NA
Brara.B02046.1 1.0 NA NA
Brara.E01518.1 1.0 1 NA
Brara.F00066.1 1.0 NA NA
Brara.G03156.1 1.0 1 NA
Brara.H00096.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference