Bra-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      G    AAA   --AAC   A      A             A     --   TA    TAGC
   GTT ATGT   GGT     GCG GATATT GTGCGGTTCAATC AATAG  TCG  CTCT    
   ||| ||||   |||     ||| |||||| ||||||||||||| |||||  |||  ||||     
   CGG TACA   CCA     CGC CTATAA CGTGCCGAGTTAG TTGTT  GGC  GAGA    
AAA   -    --A   AAATA   A      C             C     TT   TA    TTAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-587 Ath-MIR171b Ath-Chr1: 3961347-3961470 - Brassica rapa Bra-MIR171c Bra-A08: 21440253-21440376 +
SY-1045 Bra-MIR171c Bra-A08: 21440253-21440376 + Brassica rapa Bra-MIR171b Bra-A09: 42454843-42454966 +
SY-1046 Bra-MIR171c Bra-A08: 21440253-21440376 + Capsella rubella Cru-MIR171b Cru-scaffold_1: 4060735-4060859 -
SY-1047 Bra-MIR171c Bra-A08: 21440253-21440376 + Eutrema salsugineum Esa-MIR171d Esa-scaffold_5: 11619062-11619185 +
SY-1049 Bra-MIR171d Bra-A06: 4390389-4390512 - Brassica rapa Bra-MIR171c Bra-A08: 21440253-21440376 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C02285.1 1.5 NA NA
Brara.C04364.1 1.5 NA NA
Brara.D00148.1 1.5 NA NA
Brara.G00175.1 1.5 2 NA
Brara.G01771.1 1.5 NA NA
Brara.I00017.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference