Bra-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CGA                       -     ACA    TTTG
   GATATTGGTGTGGTTCAATCAGA AAACC   CTCT    
   ||||||||||||||||||||||| |||||   ||||     
   CTATAACCGTGCCGAGTTAGTTT TTTGG   GAGA    
GCA                       G     CTA    TGTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1042 Bra-MIR171a Bra-Scaffold57670: 75995-76079 + Eutrema salsugineum Esa-MIR171e Esa-scaffold_8: 2266336-2266459 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C02285.1 1.5 NA NA
Brara.C04364.1 1.5 NA NA
Brara.D00148.1 1.5 NA NA
Brara.G00175.1 1.5 2 NA
Brara.G01771.1 1.5 NA NA
Brara.I00017.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference