Bra-MIR171g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAGGTAAAACTTCTAA    C               G           ATC    TATCTT
                  GTAG GATATTGGTACGGTT AATCGAATCAA   ACTC      
                  |||| ||||||||||||||| |||||||||||   ||||       
                  TATC CTATAACCGTGCCGA TTAGTTTAGTT   TGGG      
AAACACTAAAAACAGCAT    T               G           GAC    TTCTCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1056 Bra-MIR171g Bra-A06: 10071562-10071685 - Eutrema salsugineum Esa-MIRN1027 Esa-scaffold_16: 3464448-3464561 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C04364.1 0.5 0 NA
Brara.C02285.1 1.0 NA NA
Brara.D00148.1 1.0 NA NA
Brara.G01771.1 1.0 NA NA
Brara.I00017.1 1.0 NA NA
Brara.I05195.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference