Bra-MIR5654a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     --TC   TATTA                          CC    T    C  GAA
TTTTG    AGG     ACAAGATAAATCCCAAGCATCATCCA  TTAT AGCC TT   
|||||    |||     ||||||||||||||||||||||||||  |||| |||| ||    
AAAAT    TCC     TGTTTTATTTAGGGTTCGTAGTAGGT  AATG TCGG AG   
     CTTC   TCTCA                          AA    T    A  TAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1189 Bra-MIR5654a Bra-A05: 13217340-13217457 - Brassica rapa Bra-MIR5654b Bra-A09: 24885421-24885540 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.E01773.1 0.0 0 NA
Brara.H02640.1 1.5 2 NA
Brara.I05037.1 1.5 2 NA
Brara.I05081.1 1.5 NA NA
Brara.I05094.1 1.5 NA NA
Brara.I05207.1 1.5 2 NA
Brara.J00553.1 1.5 NA NA
Brara.K01399.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference