Bra-MIR5716

Basic info.

• miRNA locus ID
• Bra-MIR5716

• miRNA locus accession
• PmiREN002555

• Organism
• Brassica rapa

• Genomic location
• Bra-A09  1475368  1475489  -

• Comments
• A member of family MIR5716

• Confidence level
• 

Secondary strurture and sequence

 TTC ----  T -                     CA --        A -          CTCTATG
T   C    TT T CATTTATTGTTTATATCTTCA  T  ATCTAAAG G TTTCTTCAGT       
|   |    || | |||||||||||||||||||||  |  |||||||| | ||||||||||       A
G   G    GA A AGTAAGTAACAAATATAGAAG  T  ATAGGTTT C TAAAGAAGTC       
 --- TAAA  - C                     -- TA        - A          ATTTAAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3275
• Chromosome: Bra-A09
• Cluster start: 1475368
• Cluster end: 1477232

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference