Bra-MIR159a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TACCCGAGAACAAAGAAGTA         A         C      -TT    ------      AG       G  A  C    A TC     -    CTT      ACAT
                      GGGCTCCTT TAGTTCAAA GAGAGT   AGCA      GGGTAA  AAAAGCT CT AG TATG A  CCATA AGCC   ATCCTT    
                      ||||||||| ||||||||| ||||||   ||||      ||||||  ||||||| || || |||| |  ||||| ||||   ||||||    A
                      CTCGAGGGA GTTAGGTTT TTCTCA   TCGT      CCCGTT  TTTTCGA GA TC ATAC T  GGTAT TTGG   TAGGAA    
TCTATTTCACTTTCTTCTACAT         A         C      TTT    TAATTT      CA       G  C  T    A TC     A    -TT      AAAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-61 Aly-MIR159a Aly-scaffold_2: 15958622-15958842 - Brassica rapa Bra-MIR159a Bra-A07: 19765886-19766103 +
SY-437 Ath-MIR159a Ath-Chr1: 27713214-27713433 - Brassica rapa Bra-MIR159a Bra-A07: 19765886-19766103 +
SY-726 Bol-MIR159a Bol-C02: 16850346-16850562 - Brassica rapa Bra-MIR159a Bra-A07: 19765886-19766103 +
SY-731 Bol-MIR159b Bol-C06: 33256920-33257135 + Brassica rapa Bra-MIR159a Bra-A07: 19765886-19766103 +
SY-736 Bol-MIR159c Bol-C06: 3552444-3552661 + Brassica rapa Bra-MIR159a Bra-A07: 19765886-19766103 +
SY-923 Bra-MIR159a Bra-A07: 19765886-19766103 + Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-924 Bra-MIR159a Bra-A07: 19765886-19766103 + Capsella rubella Cru-MIR159b Cru-scaffold_2: 11281838-11282056 -
SY-925 Bra-MIR159a Bra-A07: 19765886-19766103 + Eutrema salsugineum Esa-MIR159b Esa-scaffold_9: 3074879-3075095 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C01651.1 1.0 NA NA
Brara.B01349.1 1.5 1 NA
Brara.A01703.1 2.0 NA NA
Brara.D01963.1 2.0 NA NA
Brara.G01884.1 2.0 1 NA
Brara.I04172.1 2.0 1 NA
Brara.J00957.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference