PmiREN: Plant microRNA Encyclopedia

Cru-MIR398c

Basic info.

miRNA locus ID
Cru-MIR398c

miRNA locus accession
PmiREN002810

Organism
Capsella rubella

Genomic location
Cru-scaffold_6 4733570 4733696 +

Comments
A member of family MIR398

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTAA     T   ---     A     TC   A            -T  ATTCAAC  C      GA
    GGTAG GGA   ACTCG CAGGG  GAC TGAGAACACATG  GC       GA TGTGAT  
    ||||| |||   ||||| |||||  ||| ||||||||||||  ||       || ||||||   
    CCATC CTT   TGAGT GTCCC  CTG ACTCTTGTGTAC  TG       CT ACATTA  
 CTG     T   TTT     C     CA   G            TT  -GCCTCT  -      CC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3283
Chromosome: Cru-scaffold_6
Cluster start: 4729354
Cluster end: 4733696

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Cru-MIR398b , Cru-MIR398c	PmiREN002809, PmiREN002810	Cru-scaffold_6	+	4729354	4733696

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0006s1273.1	0.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR398c

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