PmiREN: Plant microRNA Encyclopedia

Gma-MIR171a

Basic info.

miRNA locus ID
Gma-MIR171a

miRNA locus accession
PmiREN006844

Organism
Glycine max

Genomic location
Gma-Gm12 8443093 8443217 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     GTAGAGGGGACC     AACGG         C         A        AT        T
                 GGTTC     GATATTGGT CGGTTCAAT AGAAAGCA  GCTCAAAA 
                 |||||     ||||||||| ||||||||| ||||||||  |||||||| G
                 CCAAG     CTATAACCG GCCGAGTTA TTTTTTGT  TGGGTTTT 
CCCCATACTTCTCGTCA     ---CA         T         C        CC        T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1308	Gma-MIR171a	Gma-Gm12: 8443093-8443217 +	Medicago truncatula	Mtr-MIR171i	Mtr-chr4: 17233473-17233584 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.11G168219.1	1.5	NA	0 (6)
Glyma.02G241400.1	NA	NA	2 (2)
Glyma.03G121100.1	NA	NA	2 (2)
Glyma.11G213000.4	NA	NA	2 (3)
Glyma.14G211100.1	NA	NA	2 (1)
Glyma.18G043600.1	NA	NA	2 (2)
Glyma.01G079500.1	1.5	NA	NA
Glyma.01G136300.1	1.5	NA	NA
Glyma.03G031800.1	1.5	NA	NA
Glyma.06G132200.2	1.5	NA	NA
Glyma.01G177200.1	2.0	NA	NA
Glyma.04G251900.1	2.0	NA	NA
Glyma.06G110800.1	2.0	NA	NA
Glyma.10G261600.1	2.0	NA	NA
Glyma.11G065200.1	2.0	2	NA
Glyma.13G204500.1	2.0	NA	NA
Glyma.15G108100.4	2.0	NA	NA
Glyma.20G129200.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018