PmiREN: Plant microRNA Encyclopedia

Gma-MIR171b

Basic info.

miRNA locus ID
Gma-MIR171b

miRNA locus accession
PmiREN006845

Organism
Glycine max

Genomic location
Gma-Gm04 46988569 46988680 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TC     --         C  C           A      A        CAACCATT
   TGCAA  AAGTAGACA GG GTGATATTGGT CGGCTC TCTTAATT        
   |||||  ||||||||| || ||||||||||| |||||| ||||||||         
   ACGTT  TTCGTTTGT TC CACTATAACTA GCCGAG AGAGTTAA        
TAT     AC         -  T           A      C        CAACTATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3469
Chromosome: Gma-Gm04
Cluster start: 46988569
Cluster end: 46989003

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Gma-MIR171b , Gma-MIR171r	PmiREN006845, PmiREN006861	Gma-Gm04	+	46988569	46989003

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.06G110800.1	1.5	NA	0 (1)
Glyma.15G083300.2	4.0	NA	2 (1)
Glyma.10G159600.1	NA	NA	2 (1)
Glyma.19G259800.3	NA	NA	2 (1)
Glyma.04G251900.1	1.5	NA	4 (1)

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018